Pumpkin Chocolate Chip Protein Muffins

Last updated February 3, 2026 By Kelly Nardo | 182 Comments
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Pumpkin Chocolate Chip Protein Muffins made in the blender with oats, pumpkin, Greek yogurt, protein powder, pumpkin spice, and chocolate chips! High protein and low carb and only 122 calories with 7 grams of protein per muffin!
Prep: 5 minutes
Cook: 25 minutes
Total Time: 30 minutes
Servings 12
4.44 from 292 votes

Pumpkin Chocolate Chip Protein Muffins made in the blender with oats, pumpkin, Greek yogurt, protein powder, pumpkin spice, and chocolate chips! High protein and low carb and only 122 calories with 7 grams of protein per muffin!

Overhead shot of pumpkin protein muffins on a metal cooling rack.

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Pumpkin protein muffins!! It’s officially that time of year for all the things pumpkin and I am here for it! From these protein muffins to protein bars and pumpkin pie butter.

Why we love these pumpkin protein muffins:

  • made with simple ingredients – kitchen staples that you probably already have at home
  • they couldn’t be easy to make – made in the blender and that’s it!
  • very forgiving! – I have used both whey protein and plant-based and both work great
  • have a great macro breakdown – they have a good balance of complex carbs, healthy fats, fiber, and 7 grams of protein in each one!

And they make an easy make-ahead breakfast, snack, or healthy dessert and definitely hit the spot when you are craving a baked good and don’t want to derail your nutrition goals!

Two healthy pumpkin protein muffins stacked on top of each other with the top one with a bite taken out of it. Behind it more muffins, glass of milk, and cinnamon sticks. They are sitting on a cooling rack.

Pumpkin protein muffins

This protein muffin recipe couldn’t be easier. Made in the blender with just 10 ingredients. They are made with ingredients you probably already have in your kitchen and are packed with protein!

Pumpkin chocolate chip protein muffins ingredients:

  • old fashioned rolled oats
  • pumpkin puree
  • Greek yogurt
  • eggs
  • natural or vanilla flavored protein powder – I like using vanilla
  • pumpkin pie spice
  • cinnamon
  • baking powder
  • baking soda
  • chocolate chips
  • salt

White counter filled with a bowl of spices, bowl of rolled oats, bowl of baking soda and powder, bowl of eggs, bowl of pumpkin puree, bowl of greek yogurt, and a bowl of protein powder.

First, make the oat flour. You could easily buy oat flour, but all you have to do is add rolled oats to your blender and blend for 30 seconds or so until it is broken down into a flour-like consistency. Voila, oat flour!

Next, add the rest of the ingredients (except the chocolate chips) – pumpkin, yogurt, eggs, protein powder, pumpkin pie spice, cinnamon, baking powder and soda, and salt. Blend it up until combined.

The batter will be THICK, but it’s okay. Finally, stir in the chocolate chips. I just add them to the blender and carefully stirred them instead of dirtying another bowl.

PRO TIP – only stir in about 1/3 cup of the chocolate chips and then sprinkle the rest of them on the top of the muffins after they are in the liners. This makes for pretty muffins.

Once the batter is combined, evenly distribute the batter between 12 muffin tins and bake for 25-30 minutes until a toothpick comes out clean. I used silicone muffin liners so after they cool, they will pop right out!

Gluten-free protein muffins

Rolled oats are naturally gluten-free, but they can be one of the most cross-contaminated products. To ensure this recipe is gluten-free, look for certified gluten-free oats.

Pumpkin protein muffins substitutions

This recipe is pretty forgiving and you can change it up to fit your needs. I have made it with a few different protein powders and they work. That is the only substitution I’ve tried, but I think these others will work as well!

  • protein powder – you can use whey protein or plant-based. I would assume that most work, except collagen, as the protein helps thicken the batter.
  • no protein powder – if you don’t want to use protein powder, try 1/3-1/2 cup more of oats. This will change the nutritional breakdown though.
  • non-dairy yogurt – I haven’t tried it, but you could probably use non-dairy yogurt. Just make sure the batter is thick and if you need to, add more oat flour.
  • cottage cheese – I would think this would work the same
  • flax eggs – if you can’t have eggs, try 2 flax eggs instead

Protein muffin batter being scooped into a muffin tin lined with muffin cups.

More healthy protein snacks

Overhead shot of 6 pumpkin protein muffins in a muffin pan on a tan linen.

Overhead shot of pumpkin protein muffins on a metal cooling rack.
4.44 from 292 votes

Pumpkin Chocolate Chip Protein Muffins

Author: Kelly Nardo
Pumpkin Chocolate Chip Protein Muffins made in the blender with oats, pumpkin, Greek yogurt, protein powder, pumpkin spice, and chocolate chips! High protein and low carb and only 122 calories with 7 grams of protein per muffin!
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Course: Breakfast, Dessert, Snack
Calories: 122kcal
Protein: 7g
Carbs: 15g
Fat: 6g
Prep Time: 5 minutes
Cook Time: 25 minutes
Total Time: 30 minutes
Servings: 12

ingredients

instructions

  • Preheat the oven to 350 degrees Fahrenheit.
  • Add the oats to a Vitamix, blender, or food processor and process until a flour forms (about 20 seconds).
  • Add the pumpkin, Greek yogurt, eggs, protein powder, pumpkin pie spice, cinnamon, baking powder, baking soda, and salt and blend again until well combined. Try not to overprocess it if you can. Stir in the chocolate chips**.
  • Distribute into 12 silicone muffin liners (or regular muffin liners that are greased).
  • Bake for 25-30 minutes or until a toothpick comes out clean. 25 minutes will be a little moister while 30 minutes won't be as moist. Enjoy!

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video

YouTube video

notes

*I have tried these with a few different kinds of protein powder and both whey and plant-based have worked. You want 1/2 cup which is about 50-60 grams depending on the protein used. I prefer a vanilla flavor, but any flavor will work.
**Tip: only stir in about 1/3 cup of the chocolate chips and then sprinkle the rest of them on the top of the muffins after they are in the liners. This makes for pretty muffins.
Nutrition information is based on using plant-based protein. Nutrition will vary based on the protein used.

nutrition

Nutrition Facts
Pumpkin Chocolate Chip Protein Muffins
Amount Per Serving (1 muffin)
Calories 122 Calories from Fat 54
% Daily Value*
Fat 6g9%
Saturated Fat 2.8g18%
Polyunsaturated Fat 0.4g
Monounsaturated Fat 0.5g
Potassium 193mg6%
Carbohydrates 15g5%
Fiber 3g13%
Sugar 5g6%
Protein 7g14%
Vitamin A 3226IU65%
Vitamin C 1mg1%
Calcium 46mg5%
Iron 3mg17%
* Percent Daily Values are based on a 2000 calorie diet.
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Recipe by Kelly Nardo, Eat the Gains | Photography by The Mindful Hapa

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These Pumpkin Chocolate Chip Protein Muffins are made in a blender and are high protein & low carb, gluten free, and less than 120 calories - Eat the Gains

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182 Comments

  1. I noticed the amount of salt isn’t in the list of ingredients however it says to add the salt in the directions.
    Can you tell me how much salt.?

    1. Hi Yvonne, thank you for pointing that out. I usually just do a pinch of salt (maybe 1/8 teaspoon), but you can adjust according to your taste.

  2. 5 stars
    These are AMAZING!!! One of my favorite new recipes this year. I used pumpkin protein powder and it’s phenomenal. I made a bunch for my husband and son to take on their hunting trip. I love that it sneaks in some protein in a nice snack for my picky son . This was so easy to make and not hard to clean up. Thank you for sharing!

  3. 1 star
    I typically enjoy your recipes and am accustomed to clean eating, but this one is not a winner. I followed the recipe to a “T” using a food scale. The texture turned out gummy and the flavor was bland. I left the muffins in the oven for exactly 26 minutes and they stuck to the pan, even after being generously greased. Small tweaks would not have helped either.

    In my experience baking, I think 25 minutes may have been overkill. Typically oat-based muffins can go in for 18-22 minutes. Perhaps the double egg combined with the Greek yogurt threw off the texture too. I hate leaving negative feedback, but I was so disappointed with how these turned out. I wish I had better comments or tips for improvement 🙁

    1. Hey Gina, sorry to hear they didn’t work out for you. Not sure what kind of protein powder you used, but that could change the outcome (I have used both whey and plant-based, and both work though). I will say, they definitely aren’t your typical muffin and are pretty moist rather than crumbly. With the greek yogurt, pumpkin, and eggs, I found they needed to be baked a little longer. I’m not sure what tips to add but watching the video to see the texture of the batter (it’s pretty thick) could help. I do appreciate your feedback though!

  4. 5 stars
    These are by far my favorite muffins! My teen daughter loves them too. I use chocolate protein powder. I use silicone muffin liners & they freeze well too.