Pumpkin Chocolate Chip Protein Muffins

Last updated February 3, 2026 By Kelly Nardo | 182 Comments
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Pumpkin Chocolate Chip Protein Muffins made in the blender with oats, pumpkin, Greek yogurt, protein powder, pumpkin spice, and chocolate chips! High protein and low carb and only 122 calories with 7 grams of protein per muffin!
Prep: 5 minutes
Cook: 25 minutes
Total Time: 30 minutes
Servings 12
4.44 from 292 votes

Pumpkin Chocolate Chip Protein Muffins made in the blender with oats, pumpkin, Greek yogurt, protein powder, pumpkin spice, and chocolate chips! High protein and low carb and only 122 calories with 7 grams of protein per muffin!

Overhead shot of pumpkin protein muffins on a metal cooling rack.

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Pumpkin protein muffins!! It’s officially that time of year for all the things pumpkin and I am here for it! From these protein muffins to protein bars and pumpkin pie butter.

Why we love these pumpkin protein muffins:

  • made with simple ingredients – kitchen staples that you probably already have at home
  • they couldn’t be easy to make – made in the blender and that’s it!
  • very forgiving! – I have used both whey protein and plant-based and both work great
  • have a great macro breakdown – they have a good balance of complex carbs, healthy fats, fiber, and 7 grams of protein in each one!

And they make an easy make-ahead breakfast, snack, or healthy dessert and definitely hit the spot when you are craving a baked good and don’t want to derail your nutrition goals!

Two healthy pumpkin protein muffins stacked on top of each other with the top one with a bite taken out of it. Behind it more muffins, glass of milk, and cinnamon sticks. They are sitting on a cooling rack.

Pumpkin protein muffins

This protein muffin recipe couldn’t be easier. Made in the blender with just 10 ingredients. They are made with ingredients you probably already have in your kitchen and are packed with protein!

Pumpkin chocolate chip protein muffins ingredients:

  • old fashioned rolled oats
  • pumpkin puree
  • Greek yogurt
  • eggs
  • natural or vanilla flavored protein powder – I like using vanilla
  • pumpkin pie spice
  • cinnamon
  • baking powder
  • baking soda
  • chocolate chips
  • salt

White counter filled with a bowl of spices, bowl of rolled oats, bowl of baking soda and powder, bowl of eggs, bowl of pumpkin puree, bowl of greek yogurt, and a bowl of protein powder.

First, make the oat flour. You could easily buy oat flour, but all you have to do is add rolled oats to your blender and blend for 30 seconds or so until it is broken down into a flour-like consistency. Voila, oat flour!

Next, add the rest of the ingredients (except the chocolate chips) – pumpkin, yogurt, eggs, protein powder, pumpkin pie spice, cinnamon, baking powder and soda, and salt. Blend it up until combined.

The batter will be THICK, but it’s okay. Finally, stir in the chocolate chips. I just add them to the blender and carefully stirred them instead of dirtying another bowl.

PRO TIP – only stir in about 1/3 cup of the chocolate chips and then sprinkle the rest of them on the top of the muffins after they are in the liners. This makes for pretty muffins.

Once the batter is combined, evenly distribute the batter between 12 muffin tins and bake for 25-30 minutes until a toothpick comes out clean. I used silicone muffin liners so after they cool, they will pop right out!

Gluten-free protein muffins

Rolled oats are naturally gluten-free, but they can be one of the most cross-contaminated products. To ensure this recipe is gluten-free, look for certified gluten-free oats.

Pumpkin protein muffins substitutions

This recipe is pretty forgiving and you can change it up to fit your needs. I have made it with a few different protein powders and they work. That is the only substitution I’ve tried, but I think these others will work as well!

  • protein powder – you can use whey protein or plant-based. I would assume that most work, except collagen, as the protein helps thicken the batter.
  • no protein powder – if you don’t want to use protein powder, try 1/3-1/2 cup more of oats. This will change the nutritional breakdown though.
  • non-dairy yogurt – I haven’t tried it, but you could probably use non-dairy yogurt. Just make sure the batter is thick and if you need to, add more oat flour.
  • cottage cheese – I would think this would work the same
  • flax eggs – if you can’t have eggs, try 2 flax eggs instead

Protein muffin batter being scooped into a muffin tin lined with muffin cups.

More healthy protein snacks

Overhead shot of 6 pumpkin protein muffins in a muffin pan on a tan linen.

Overhead shot of pumpkin protein muffins on a metal cooling rack.
4.44 from 292 votes

Pumpkin Chocolate Chip Protein Muffins

Author: Kelly Nardo
Pumpkin Chocolate Chip Protein Muffins made in the blender with oats, pumpkin, Greek yogurt, protein powder, pumpkin spice, and chocolate chips! High protein and low carb and only 122 calories with 7 grams of protein per muffin!
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Course: Breakfast, Dessert, Snack
Calories: 122kcal
Protein: 7g
Carbs: 15g
Fat: 6g
Prep Time: 5 minutes
Cook Time: 25 minutes
Total Time: 30 minutes
Servings: 12

ingredients

instructions

  • Preheat the oven to 350 degrees Fahrenheit.
  • Add the oats to a Vitamix, blender, or food processor and process until a flour forms (about 20 seconds).
  • Add the pumpkin, Greek yogurt, eggs, protein powder, pumpkin pie spice, cinnamon, baking powder, baking soda, and salt and blend again until well combined. Try not to overprocess it if you can. Stir in the chocolate chips**.
  • Distribute into 12 silicone muffin liners (or regular muffin liners that are greased).
  • Bake for 25-30 minutes or until a toothpick comes out clean. 25 minutes will be a little moister while 30 minutes won't be as moist. Enjoy!

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notes

*I have tried these with a few different kinds of protein powder and both whey and plant-based have worked. You want 1/2 cup which is about 50-60 grams depending on the protein used. I prefer a vanilla flavor, but any flavor will work.
**Tip: only stir in about 1/3 cup of the chocolate chips and then sprinkle the rest of them on the top of the muffins after they are in the liners. This makes for pretty muffins.
Nutrition information is based on using plant-based protein. Nutrition will vary based on the protein used.

nutrition

Nutrition Facts
Pumpkin Chocolate Chip Protein Muffins
Amount Per Serving (1 muffin)
Calories 122 Calories from Fat 54
% Daily Value*
Fat 6g9%
Saturated Fat 2.8g18%
Polyunsaturated Fat 0.4g
Monounsaturated Fat 0.5g
Potassium 193mg6%
Carbohydrates 15g5%
Fiber 3g13%
Sugar 5g6%
Protein 7g14%
Vitamin A 3226IU65%
Vitamin C 1mg1%
Calcium 46mg5%
Iron 3mg17%
* Percent Daily Values are based on a 2000 calorie diet.
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Recipe by Kelly Nardo, Eat the Gains | Photography by The Mindful Hapa

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These Pumpkin Chocolate Chip Protein Muffins are made in a blender and are high protein & low carb, gluten free, and less than 120 calories - Eat the Gains

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4.44 from 292 votes (246 ratings without comment)

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182 Comments

  1. 4 stars
    This recipe was really easy to make and all of the ingredients go together nicely! If you prefer these a little sweeter then I recommend adding some honey or maple syrup. I’m not sure the proportions or how it would mess with the nutritional information but a little more sweetness evenly distributed throughout kicks it up a notch!

    1. Glad you enjoyed them, Lindsey! I’ll have to make them again and add a little sweetener to see how they come out. Thanks for trying them!

  2. 4 stars
    I had a major sweet craving so I tried making these over the weekend. I’ve never used oat flour or protein powder in baking before, but they turned out surprisingly good! They still taste “healthy” but had enough sweetness in them that I didn’t feel like I was really missing out on a traditional muffin.

  3. 2 stars
    I prefer healthy muffins that aren’t loaded with sugar but Zero sugar is a no go for me . These were good consistency but BLAND

    1. The sweetness will depend on the protein powder being used. I find mine adds enough, but if not, you can always add more since sweetness is such a personal preference. I like to taste-test a little of the batter before baking. Sorry to hear you didn’t enjoy them.

  4. Hi! These are great. How do you recommend storing, should they be put in the fridge right away or can they sit out a few days? Can they be frozen?

  5. 5 stars
    These muffins turned out very tasty and my kitchen smelled amazing! This was my first time making oat flour and baking with protein powder and was pleasantly surprised that I didn’t feel like I was missing out on all purpose flour :). The only modification I made is adding a some brown sugar substitute – I have a bad sweet tooth!

  6. These were so delicious! I made with vanilla protein powder – just the perfect amount of sweetness and spice! My daughter loved them too – thanks for the recipe!